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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs56341208 chr2:86298350 CATGTGTGTGT/C 0.000191 474 13.77 16.4 16.02 KM Plot
THCA rs56342375 chr2:29016233 A/C 0.000118 489 15.32 17.93 14.98 KM Plot
THCA rs56345462 chr1:156898233 T/C 9.68E-7 469 16.63 14.8 11.3 KM Plot
THCA rs56348825 chr22:26427522 T/G 1.58E-6 481 16.13 15.17 12.95 KM Plot
THCA rs56351903 chr2:241529078 G/C 2.19E-11 484 15.9 15.42 19.27 KM Plot
THCA rs56356916 chr3:56640653 G/T 4.01E-6 486 16.87 12.53 8.47 KM Plot
THCA rs56368241 chr19:43544929 T/C 6.1E-5 487 15.33 17.73 10.08 KM Plot
THCA rs56372341 chr1:156930053 C/T 2.15E-6 486 16.6 15.68 11.48 KM Plot
THCA rs56373697 chr2:241525840 C/T 2.17E-11 483 15.9 15.42 19.27 KM Plot
THCA rs56388155 chr3:96791737 G/C 2.8E-10 486 15.9 15.17 24.65 KM Plot
THCA rs56400494 chr14:59603469 A/AG 4.89E-10 486 15.93 16.2 5.8 KM Plot
THCA rs56408422 chr1:22360138 C/T 1.34E-8 466 15.23 18.47 9.47 KM Plot
THCA rs56659513 chr9:95848432 G/A 2.04E-6 487 15.68 18.43 16.57 KM Plot
THCA rs566621 chr1:74770878 A/T 7.35E-10 487 15.7 16.8 7.77 KM Plot
THCA rs56678257 chr15:41267490 GTGTT/G 0.000289 479 17 16.67 14.67 KM Plot